更新libclamav库1.0.0版本

clamav/libclamav_rust/.cargo/vendor/regex/examples/regexdna-output.txt

@@ -0,0 +1,13 @@
+agggtaaa|tttaccct 0
+[cgt]gggtaaa|tttaccc[acg] 3
+a[act]ggtaaa|tttacc[agt]t 9
+ag[act]gtaaa|tttac[agt]ct 8
+agg[act]taaa|ttta[agt]cct 10
+aggg[acg]aaa|ttt[cgt]ccct 3
+agggt[cgt]aa|tt[acg]accct 4
+agggta[cgt]a|t[acg]taccct 3
+agggtaa[cgt]|[acg]ttaccct 5
+
+101745
+100000
+133640

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna-bytes.rs

@@ -0,0 +1,68 @@
+// The Computer Language Benchmarks Game
+// https://benchmarksgame-team.pages.debian.net/benchmarksgame/
+//
+// contributed by the Rust Project Developers
+// contributed by TeXitoi
+// contributed by BurntSushi
+
+use std::io::{self, Read};
+use std::sync::Arc;
+use std::thread;
+
+macro_rules! regex {
+    ($re:expr) => {
+        ::regex::bytes::Regex::new($re).unwrap()
+    };
+}
+
+fn main() {
+    let mut seq = Vec::with_capacity(51 * (1 << 20));
+    io::stdin().read_to_end(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, &b""[..]).into_owned();
+    let clen = seq.len();
+    let seq_arc = Arc::new(seq.clone());
+
+    let variants = vec![
+        regex!("agggtaaa|tttaccct"),
+        regex!("[cgt]gggtaaa|tttaccc[acg]"),
+        regex!("a[act]ggtaaa|tttacc[agt]t"),
+        regex!("ag[act]gtaaa|tttac[agt]ct"),
+        regex!("agg[act]taaa|ttta[agt]cct"),
+        regex!("aggg[acg]aaa|ttt[cgt]ccct"),
+        regex!("agggt[cgt]aa|tt[acg]accct"),
+        regex!("agggta[cgt]a|t[acg]taccct"),
+        regex!("agggtaa[cgt]|[acg]ttaccct"),
+    ];
+    let mut counts = vec![];
+    for variant in variants {
+        let seq = seq_arc.clone();
+        let restr = variant.to_string();
+        let future = thread::spawn(move || variant.find_iter(&seq).count());
+        counts.push((restr, future));
+    }
+
+    let substs = vec![
+        (regex!("B"), &b"(c|g|t)"[..]),
+        (regex!("D"), &b"(a|g|t)"[..]),
+        (regex!("H"), &b"(a|c|t)"[..]),
+        (regex!("K"), &b"(g|t)"[..]),
+        (regex!("M"), &b"(a|c)"[..]),
+        (regex!("N"), &b"(a|c|g|t)"[..]),
+        (regex!("R"), &b"(a|g)"[..]),
+        (regex!("S"), &b"(c|g)"[..]),
+        (regex!("V"), &b"(a|c|g)"[..]),
+        (regex!("W"), &b"(a|t)"[..]),
+        (regex!("Y"), &b"(c|t)"[..]),
+    ];
+    let mut seq = seq;
+    for (re, replacement) in substs {
+        seq = re.replace_all(&seq, replacement).into_owned();
+    }
+
+    for (variant, count) in counts {
+        println!("{} {}", variant, count.join().unwrap());
+    }
+    println!("\n{}\n{}\n{}", ilen, clen, seq.len());
+}

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna-cheat.rs

@@ -0,0 +1,90 @@
+// The Computer Language Benchmarks Game
+// https://benchmarksgame-team.pages.debian.net/benchmarksgame/
+//
+// contributed by the Rust Project Developers
+// contributed by TeXitoi
+// contributed by BurntSushi
+
+// This technically solves the problem posed in the `regex-dna` benchmark, but
+// it cheats by combining all of the replacements into a single regex and
+// replacing them with a single linear scan. i.e., it re-implements
+// `replace_all`. As a result, this is around 25% faster. ---AG
+
+use std::io::{self, Read};
+use std::sync::Arc;
+use std::thread;
+
+macro_rules! regex {
+    ($re:expr) => {
+        ::regex::Regex::new($re).unwrap()
+    };
+}
+
+fn main() {
+    let mut seq = String::with_capacity(50 * (1 << 20));
+    io::stdin().read_to_string(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, "").into_owned();
+    let clen = seq.len();
+    let seq_arc = Arc::new(seq.clone());
+
+    let variants = vec![
+        regex!("agggtaaa|tttaccct"),
+        regex!("[cgt]gggtaaa|tttaccc[acg]"),
+        regex!("a[act]ggtaaa|tttacc[agt]t"),
+        regex!("ag[act]gtaaa|tttac[agt]ct"),
+        regex!("agg[act]taaa|ttta[agt]cct"),
+        regex!("aggg[acg]aaa|ttt[cgt]ccct"),
+        regex!("agggt[cgt]aa|tt[acg]accct"),
+        regex!("agggta[cgt]a|t[acg]taccct"),
+        regex!("agggtaa[cgt]|[acg]ttaccct"),
+    ];
+    let mut counts = vec![];
+    for variant in variants {
+        let seq = seq_arc.clone();
+        let restr = variant.to_string();
+        let future = thread::spawn(move || variant.find_iter(&seq).count());
+        counts.push((restr, future));
+    }
+
+    let substs = vec![
+        (b'B', "(c|g|t)"),
+        (b'D', "(a|g|t)"),
+        (b'H', "(a|c|t)"),
+        (b'K', "(g|t)"),
+        (b'M', "(a|c)"),
+        (b'N', "(a|c|g|t)"),
+        (b'R', "(a|g)"),
+        (b'S', "(c|g)"),
+        (b'V', "(a|c|g)"),
+        (b'W', "(a|t)"),
+        (b'Y', "(c|t)"),
+    ]; // combined into one regex in `replace_all`
+    let seq = replace_all(&seq, substs);
+
+    for (variant, count) in counts {
+        println!("{} {}", variant, count.join().unwrap());
+    }
+    println!("\n{}\n{}\n{}", ilen, clen, seq.len());
+}
+
+fn replace_all(text: &str, substs: Vec<(u8, &str)>) -> String {
+    let mut replacements = vec![""; 256];
+    let mut alternates = vec![];
+    for (re, replacement) in substs {
+        replacements[re as usize] = replacement;
+        alternates.push((re as char).to_string());
+    }
+
+    let re = regex!(&alternates.join("|"));
+    let mut new = String::with_capacity(text.len());
+    let mut last_match = 0;
+    for m in re.find_iter(text) {
+        new.push_str(&text[last_match..m.start()]);
+        new.push_str(replacements[text.as_bytes()[m.start()] as usize]);
+        last_match = m.end();
+    }
+    new.push_str(&text[last_match..]);
+    new
+}

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna-replace.rs

@@ -0,0 +1,17 @@
+use std::io::{self, Read};
+
+macro_rules! regex {
+    ($re:expr) => {{
+        use regex::internal::ExecBuilder;
+        ExecBuilder::new($re).build().unwrap().into_regex()
+    }};
+}
+
+fn main() {
+    let mut seq = String::with_capacity(50 * (1 << 20));
+    io::stdin().read_to_string(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, "").into_owned();
+    println!("original: {}, replaced: {}", ilen, seq.len());
+}

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna-single-cheat.rs

@@ -0,0 +1,75 @@
+// The Computer Language Benchmarks Game
+// https://benchmarksgame-team.pages.debian.net/benchmarksgame/
+//
+// contributed by the Rust Project Developers
+// contributed by TeXitoi
+// contributed by BurntSushi
+
+use std::io::{self, Read};
+
+macro_rules! regex {
+    ($re:expr) => {
+        ::regex::Regex::new($re).unwrap()
+    };
+}
+
+fn main() {
+    let mut seq = String::with_capacity(50 * (1 << 20));
+    io::stdin().read_to_string(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, "").into_owned();
+    let clen = seq.len();
+
+    let variants = vec![
+        regex!("agggtaaa|tttaccct"),
+        regex!("[cgt]gggtaaa|tttaccc[acg]"),
+        regex!("a[act]ggtaaa|tttacc[agt]t"),
+        regex!("ag[act]gtaaa|tttac[agt]ct"),
+        regex!("agg[act]taaa|ttta[agt]cct"),
+        regex!("aggg[acg]aaa|ttt[cgt]ccct"),
+        regex!("agggt[cgt]aa|tt[acg]accct"),
+        regex!("agggta[cgt]a|t[acg]taccct"),
+        regex!("agggtaa[cgt]|[acg]ttaccct"),
+    ];
+    for re in variants {
+        println!("{} {}", re.to_string(), re.find_iter(&seq).count());
+    }
+
+    let substs = vec![
+        (b'B', "(c|g|t)"),
+        (b'D', "(a|g|t)"),
+        (b'H', "(a|c|t)"),
+        (b'K', "(g|t)"),
+        (b'M', "(a|c)"),
+        (b'N', "(a|c|g|t)"),
+        (b'R', "(a|g)"),
+        (b'S', "(c|g)"),
+        (b'V', "(a|c|g)"),
+        (b'W', "(a|t)"),
+        (b'Y', "(c|t)"),
+    ]; // combined into one regex in `replace_all`
+    let seq = replace_all(&seq, substs);
+
+    println!("\n{}\n{}\n{}", ilen, clen, seq.len());
+}
+
+fn replace_all(text: &str, substs: Vec<(u8, &str)>) -> String {
+    let mut replacements = vec![""; 256];
+    let mut alternates = vec![];
+    for (re, replacement) in substs {
+        replacements[re as usize] = replacement;
+        alternates.push((re as char).to_string());
+    }
+
+    let re = regex!(&alternates.join("|"));
+    let mut new = String::with_capacity(text.len());
+    let mut last_match = 0;
+    for m in re.find_iter(text) {
+        new.push_str(&text[last_match..m.start()]);
+        new.push_str(replacements[text.as_bytes()[m.start()] as usize]);
+        last_match = m.end();
+    }
+    new.push_str(&text[last_match..]);
+    new
+}

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna-single.rs

@@ -0,0 +1,57 @@
+// The Computer Language Benchmarks Game
+// https://benchmarksgame-team.pages.debian.net/benchmarksgame/
+//
+// contributed by the Rust Project Developers
+// contributed by TeXitoi
+// contributed by BurntSushi
+
+use std::io::{self, Read};
+
+macro_rules! regex {
+    ($re:expr) => {
+        ::regex::Regex::new($re).unwrap()
+    };
+}
+
+fn main() {
+    let mut seq = String::with_capacity(50 * (1 << 20));
+    io::stdin().read_to_string(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, "").into_owned();
+    let clen = seq.len();
+
+    let variants = vec![
+        regex!("agggtaaa|tttaccct"),
+        regex!("[cgt]gggtaaa|tttaccc[acg]"),
+        regex!("a[act]ggtaaa|tttacc[agt]t"),
+        regex!("ag[act]gtaaa|tttac[agt]ct"),
+        regex!("agg[act]taaa|ttta[agt]cct"),
+        regex!("aggg[acg]aaa|ttt[cgt]ccct"),
+        regex!("agggt[cgt]aa|tt[acg]accct"),
+        regex!("agggta[cgt]a|t[acg]taccct"),
+        regex!("agggtaa[cgt]|[acg]ttaccct"),
+    ];
+    for re in variants {
+        println!("{} {}", re.to_string(), re.find_iter(&seq).count());
+    }
+
+    let substs = vec![
+        (regex!("B"), "(c|g|t)"),
+        (regex!("D"), "(a|g|t)"),
+        (regex!("H"), "(a|c|t)"),
+        (regex!("K"), "(g|t)"),
+        (regex!("M"), "(a|c)"),
+        (regex!("N"), "(a|c|g|t)"),
+        (regex!("R"), "(a|g)"),
+        (regex!("S"), "(c|g)"),
+        (regex!("V"), "(a|c|g)"),
+        (regex!("W"), "(a|t)"),
+        (regex!("Y"), "(c|t)"),
+    ];
+    let mut seq = seq;
+    for (re, replacement) in substs {
+        seq = re.replace_all(&seq, replacement).into_owned();
+    }
+    println!("\n{}\n{}\n{}", ilen, clen, seq.len());
+}

clamav/libclamav_rust/.cargo/vendor/regex/examples/shootout-regex-dna.rs

@@ -0,0 +1,68 @@
+// The Computer Language Benchmarks Game
+// https://benchmarksgame-team.pages.debian.net/benchmarksgame/
+//
+// contributed by the Rust Project Developers
+// contributed by TeXitoi
+// contributed by BurntSushi
+
+use std::io::{self, Read};
+use std::sync::Arc;
+use std::thread;
+
+macro_rules! regex {
+    ($re:expr) => {
+        ::regex::Regex::new($re).unwrap()
+    };
+}
+
+fn main() {
+    let mut seq = String::with_capacity(51 * (1 << 20));
+    io::stdin().read_to_string(&mut seq).unwrap();
+    let ilen = seq.len();
+
+    seq = regex!(">[^\n]*\n|\n").replace_all(&seq, "").into_owned();
+    let clen = seq.len();
+    let seq_arc = Arc::new(seq.clone());
+
+    let variants = vec![
+        regex!("agggtaaa|tttaccct"),
+        regex!("[cgt]gggtaaa|tttaccc[acg]"),
+        regex!("a[act]ggtaaa|tttacc[agt]t"),
+        regex!("ag[act]gtaaa|tttac[agt]ct"),
+        regex!("agg[act]taaa|ttta[agt]cct"),
+        regex!("aggg[acg]aaa|ttt[cgt]ccct"),
+        regex!("agggt[cgt]aa|tt[acg]accct"),
+        regex!("agggta[cgt]a|t[acg]taccct"),
+        regex!("agggtaa[cgt]|[acg]ttaccct"),
+    ];
+    let mut counts = vec![];
+    for variant in variants {
+        let seq = seq_arc.clone();
+        let restr = variant.to_string();
+        let future = thread::spawn(move || variant.find_iter(&seq).count());
+        counts.push((restr, future));
+    }
+
+    let substs = vec![
+        (regex!("B"), "(c|g|t)"),
+        (regex!("D"), "(a|g|t)"),
+        (regex!("H"), "(a|c|t)"),
+        (regex!("K"), "(g|t)"),
+        (regex!("M"), "(a|c)"),
+        (regex!("N"), "(a|c|g|t)"),
+        (regex!("R"), "(a|g)"),
+        (regex!("S"), "(c|g)"),
+        (regex!("V"), "(a|c|g)"),
+        (regex!("W"), "(a|t)"),
+        (regex!("Y"), "(c|t)"),
+    ];
+    let mut seq = seq;
+    for (re, replacement) in substs {
+        seq = re.replace_all(&seq, replacement).into_owned();
+    }
+
+    for (variant, count) in counts {
+        println!("{} {}", variant, count.join().unwrap());
+    }
+    println!("\n{}\n{}\n{}", ilen, clen, seq.len());
+}